SNP Profiles of UF 668 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
1._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
2._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
3._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
4._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
5._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
6._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
7._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
8._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
9._GC-01-077-4-13	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
10._UF_668	GG	AT	AC	GT	CT	AC	_	AG	CT	AT	GG	_	CT	_
11._UF_668	GG	AT	AC	GT	CT	AC	_	AG	CT	AT	GG	_	CT	_
12._UF_668	GG	AT	AC	GT	_	AC	_	AG	CT	_	GG	_	CT	_
13._UF_668	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CT	GT
14._UF_668_Fld#_118_Plt#_6	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	_	_	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
1._UF_668	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
2._UF_668	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
3._UF_668	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
4._UF_668	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
5._GC-01-077-4-13	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
6._GC-01-077-4-13	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
7._GC-01-077-4-13	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
8._GC-01-077-4-13	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
9._GC-01-077-4-13	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
10._UF_668	CC	AC	CT	AG	GT	CG	CC	TT	GG	_	CT	_	_	AA
11._UF_668	CC	AC	CT	AG	GT	CG	CC	TT	GG	_	CT	_	_	AA
12._UF_668	CC	_	CT	AG	GT	CG	CC	TT	GG	_	CT	_	_	AA
13._UF_668	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT	AA
14._UF_668_Fld#_118_Plt#_6	CC	AC	AG	_	AC	CG	GG	AA	GG	AA	AG	AG	AG	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
1._UF_668	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
2._UF_668	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
3._UF_668	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
4._UF_668	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
5._GC-01-077-4-13	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
6._GC-01-077-4-13	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
7._GC-01-077-4-13	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
8._GC-01-077-4-13	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
9._GC-01-077-4-13	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
10._UF_668	AA	_	CT	GT	CC	AA	TT	CT	CG	AG	_	X_X	X_X	X_X
11._UF_668	AA	_	CT	GT	CC	AA	TT	CT	CG	AG	_	X_X	X_X	X_X
12._UF_668	AA	_	CT	GT	CC	AA	TT	CT	CG	_	_	X_X	X_X	X_X
13._UF_668	AA	CT	CT	GT	CC	AA	TT	CT	CG	GG	CT	X_X	X_X	X_X
14._UF_668_Fld#_118_Plt#_6	AA	_	_	AA	GG	AA	AA	AG	CG	AG	AG	X_X	X_X	X_X

Input profile: UF_668

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Mars Center for Cocoa Science, Brazil

Location: 1413 7 > FP

Dapeng Zhang, 2016

1._UF_668

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1413 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._UF_668

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1413 13

Dapeng Zhang, 2016

3._UF_668

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1413 16 > F

Dapeng Zhang, 2016

4._UF_668

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1413 5 > FP

Dapeng Zhang, 2016

5._UF_668 GC-01-077-4-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

6._UF_668 GC-01-077-4-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._UF_668 GC-01-077-4-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

8._UF_668 GC-01-077-4-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

9._UF_668 GC-01-077-4-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP4

10._UF_668

98.4 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

11._UF_668

98.4 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

12._UF_668

98.1 %
27 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 8 Row 27 31_33

Dapeng Zhang, 2016

13._UF_668

97.4 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

14._UF_668 UF_668_Fld#_118_Plt#_6

55.9 %
34 shared markers

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USDA-TARS, United States of America

Location: Field: 118, Tree: 6

Notes: TARS_Cacao_collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP929	24	TcSNP953	25	TcSNP994
26	TcSNP998	27	TcSNP1060	28	TcSNP1062	29	TcSNP1075	30	TcSNP1144
31	TcSNP1165	32	TcSNP1253	33	TcSNP1270	34	TcSNP1350	35	TcSNP1414
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484	39	TcSNP1520